MATLAB_run.md

+* [run a plugin and get results](#run-a-plugin-and-get-results)
+
+# run a plugin and get results
+
+using the run command you can make anywave run any plugins that are command line compatible, like ica, h2, spectral, etc.
+
+## Example running h2 computation
+
+````matlab
+
+% prepare cfg struct
+cfg.process = 'h2';
+cfg.time_window = 2; % h2 plugin parameters
+cfg.step= 1;
+cfg.max_lag=0.1;
+% now pick channels from currently open file in anywave
+% we suppose the data file open contains the following channels:
+% TP1 TP2 TP3
+cfg.pick_channels = {'TP1', 'TP2', 'TP3' };
+% now use a specific marker to compute h2
+cfg.use_markers = {'h2'};  % we assume there are markers labeled h2 in anywave
+
+output = anywave('run', cfg);
+% output is a struct containing resulting parameters after the process has been run.
+% in our example the out struct will contain the result_file field which is a the full path to the .mat file generated by the h2 computation.
+````
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