Using the plugin from the command line

The plugin can use the following options:

option	type	description/value
--run ica	MANDATORY	name of the plugin
--modality value	MANDATORY	value must be: MEG SEEG EEG EMG
--comp value	optional	value is the number of components to compute. Default is number of channels
--algorithm name	optional	infomax cca sobi : default is infomax
--use_seeg_electrode electrode	optional	compute ICA only on electrode
--save_comp_traces	optional	a switch to get also a .vhdr file containing the components time series

This plugin also uses the following common options:

option	type
--input_file	MANDATORY
--hp	optional
--lp	optional
--use_markers	optional
--skip_markers	optional
--output_dir	optional
--output_suffix	optional
--output_prefix	optional
--marker_file	optional

NOTE: the --montage_file option is ignored. The plugin ALWAYS uses the as recorded channels from the data file.

command line examples

Compute on MEG using default infomax algorithm.
80 components requested, signal filtered (1-70)

anywave --run ica --input_file d:\data\1\cf,rDC --modality MEG --comp 80 --hp 1 --lp 70 

Compute using sobi algorithm avoiding artefacts:

anywave --run ica --input_file d:\data\1\cf,rDC --algorithm sobi --modality MEG  --hp 1 --lp 70 --skip_markers "artefact"